I found a way around this
Before you click dedicated.bat or dedicatedLAN.bat, go into your game, hit start new game, pull up the add-ons menu, check and uncheck the ones you you do and dont want on, hit ok, go back into the add-on window and leave it up. Then start your server with it up like that. Dont close it until the server is fully up. I hope it works for you as it did me.