Build a Molecule, and share it with us!(requires a download)

[Christopher P.]

Someone should totally make a powder toy simulation like this. Essentially real life, but without the threat of killing yourself through fire or toxic fumes! :D

Create the molecule, then apply it to a simulation to see what it does! :D

[Ad Bot]

[King Leo]

Yay for chemistry!
I've synthesized the first two compounds at the lab:

(2',4'-dinitrobenzyl)pyridine: Changes color to bright purple when exposed to light. Loses it's color and turns grey in the darkness.

Triphenylmethanol: Is bright yellow in acidic environment. And looks bad-ass :D

Caffeine: the stuff that is in coffee and makes you awake!

Ethanol: yay, alcohol! (Also note how it looks like a doggie :D )

[Doomonkey]

I made caffeine too.
Here is a picture of my folder:

Some of the stuff is a little annoying because things keep hydrogen bonding that aren't supposed to... maybe.

[Axolotl2]

I'll try to make something with nitro groups.

[Jeep]

Would be amazing if we could react them.

H₂O
Cl₂
Na

Boom dead.

[Axolotl2]

I don't think it's possible to replace the hydrogens in xenic acid with sodiums.

The NaO group might exist as a substitute for the hydroxide group.

[Axolotl2]

Enjoy this organotin molecule. I like tetra coordination for some reason.



Oh wait, this is probably not possible. (CH₃CH₂)₄Sn IS possible, though.

[Doomonkey]

Enjoy this organotin molecule. I like tetra coordination for some reason.

-snip-

It doesn't look VSEPR'd. Did you auto-arrange it with MMFF94?

EDIT: I just tried to use MMFF94, why can it never find fields?

Also, how do you have the electrostatic potential surfaces, it tells me they are not yet supported.

[Axolotl2]

It doesn't look VSEPR'd. Did you auto-arrange it with MFF94?

I only used Geometric Optimization with UFF.

[Doomonkey]

(CH₃CH₂)₄Sn

I made it. It looks kind of silly.

[Axolotl2]

I made it. It looks kind of silly.

It actually does look sort of silly. Another thing silly about it is that it converts in the human body into triethyltin, which is toxic.

[allyorbase]

Here's my molecule. I don't know what it is or what it does, but I'm somehow curing cancer or something.

[Axolotl2]

Here's my molecule. I don't know what it is or what it does, but I'm somehow curing cancer or something.

Proteins are big molecules that are folded into a "knot".

Also, that protein has one heavy-looking element (the cyan one) near the left edge. I wonder what it is.

[allyorbase]

Proteins are big molecules that are folded into a "knot".

Also, that protein has one heavy-looking element near the left edge. I wonder what it is.

I was kidding about not knowing what it does. I'm usually pretty well versed in whatever I do, including folding.

[Doomonkey]

Also, that protein has one heavy-looking element (the cyan one) near the left edge. I wonder what it is.

Too many cyan elements.