I'm not sure if we're understanding each other. If you are understanding me correctly, then please correct me.
What I am looking for isn't something where zones are freely created by bricks that disappear and leave behind zones. The zones are still tied to bricks. Suppose a 2x2 configuration of 4x4 zone plates were created, it would utilize the same system in trench mod to detect configuration (perhaps using an outside tool if needed*), and it would delete the 2x2 configuration of 4x4 zone plates, and replace them with a single 8x8 zone plate.
Should work with other configurations and on vertical levels as well. Additionally, it should only work with a specific pack of bricks.
*What might be neat is a "Brick Manipulator" Wand that by default is set to "Merge" (Merges bricks together into configurations that are available for its type†.) and using right click, it switches to "Split" mode (Splits bricks into its most easily as I visible parts‡.)
†Suppose a 1x2x5 and a 1x6x5 are lined up, if you hit one of these with the wand, they become a single 1x6x5.
‡Suppose you have a 4x8, you hit it and it becomes two 4x4s.