Here I think I can explain the conceptual block a bit better now that I understand your argument better:
The falling ball can be dragged by the one floating upwards in some cases. However, the system would actually still have less acceleration if the falling one wasnt there at all. The one in water has forces (B-W) and the one in air cancels out the W for a net force of B. Even though the floating one can be dragging the other ball along because its falling too slowly, the falling one still accelerates the system. Just because the values in the system cause tensions to change the acceleration that the ball is falling at doesn't change whether it is falling and helping the system.
This is what the trolls were looking for
No they want people to not understand fluids