-Biological deck (planties)
-Toilets
-Stellar map (physical galaxy map)
-Large medical bay
-Crew rooms (dorm-like)
-CO2 generator (if your ship has plants that need it)
-O2 generator (if your ship has humans that need it)
-Elevator shaft
-Hangar
-Auditorium
-Engineering bay
-Viewing deck
-Airlock
-Dining room
-Kitchen
-Smaller hangar
-ATC (if your hangar is kinda big)
-Weapon control booths
-Communication control room
-Weaponry supply room (guns and stuff)
-Incinerator
-Cargo bay
-Bombing bay
-Escape pod
-Bridge
-Captain and co-pilot dorms
-Bar
-Swimming pool
-Jet storage
-Jet maintenance
-Captain's office
-Docking bays (for other ships to attach to yours)
-Minigun/weaponry machine room
-Lazer core room
-Weapons ammunition supply (the ones attached to the ship)
-Crew dorms
-Crew entertainment (computers and stuff)
-Smaller toilets near the dorms
-Small medical bay
-Meeting room
-Rave room (music, disco lights; everything you need after a day of hard annihilation)
That's the deck-by-deck layout of the aegis and the rooms used.